Metagenomic data analysis and characterization for the inhibitory effect of a novel Serratia fonticola strain against fungicide-resistant Botrytis cinerea


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Bozkurt E. B., Baysal Ö., Silme R. S., Marzec- Grzadziel A.

9. Uluslararası Moleküler Biyoloji ve Bitoteknoloji Kongresi, Kars, Türkiye, 6 - 10 Aralık 2020, cilt.1, sa.1, ss.107

  • Yayın Türü: Bildiri / Özet Bildiri
  • Cilt numarası: 1
  • Basıldığı Şehir: Kars
  • Basıldığı Ülke: Türkiye
  • Sayfa Sayıları: ss.107
  • İstanbul Üniversitesi Adresli: Evet

Özet

Botrytis cinerea is a plant pathogenic fungi showing rapidly development of fungicide resistance in cultivation fields and, changes its own genetic structure. Biocontrol may also reduce negative effects of toxic chemicals, which is harmfull to environment and human healthy that is public concern besides its inhibitory effect on the pathogen growth. A novel Gram (-) bacterial strain isolated from soil dispersed on agar plates treated with phenol on 2 days old colonies was used to determine its antibiosis effect on spore suspension of Botrytis cinerea. The studies showed restricted growth of the fungi spore around the phenol treated colonies. Afterwards, the selected colonies showing the highest antibiosis effect tested using double-sheet agar bio-assay with the highest and stable suppression on pathogen growth were used. Optimal concentration (CFU/ ml) was determined according to spectrophotometric analysis. MIC concentration and inhibition percentage (%) indicated by 85% inhibition ratio after 3 dpi and 65% at 10 dpi compared to the control. The bacterial strain was identified as Serratia fonticola by metagenomics analysis based on 16s rRNA. Our comparative analysis using KEGG pathway database and classification of the genes encoding enzymes playing suppressive role on the pathogen growth will provide new insight for the preparation of effective biopreparate composition and its further application in vivo assays.